 Diego | Out | 2026-02-15 | Free agent |  Sao Francisco |  Tuna Luso |
 Paulinho | Out | 2026-02-15 | Free agent | Sao Francisco | Tuna Luso |
 Ronaldy | Out | 2025-08-13 | - | Sao Francisco |  ABC ABC |
| Diego | In | 2023-12-30 | Free agent |  Galanta | Sao Francisco |
 Romário Guedes de Almeida | Out | 2019-02-21 | N/A | Sao Francisco |  Grêmio Anápolis GRE |
 Chaveirinho | In | 2018-09-17 | Free |  Manaus FC | Sao Francisco |
 Sousa | Out | 2018-04-16 | N/A | Sao Francisco |  Nacional AM NAC |
 Ricardo Patrese da Silva Marques | Out | 2018-01-08 | N/A | Sao Francisco |  Sao Raimundo |
 Elielton | Out | 2018-01-02 | N/A | Sao Francisco |  Remo REM |
 Charles Anthony Barroso Gomes | Out | 2018-01-01 | N/A | Sao Francisco |  Independente PA |
 Thiago Marabá | Out | 2018-01-01 | N/A | Sao Francisco |  Santos AP |
 Daelson | Out | 2018-01-01 | N/A | Sao Francisco | Santos AP |
 Matheus Silva | Out | 2018-01-01 | N/A | Sao Francisco |  Paysandu PAY |
 Alemão | Out | 2017-12-19 | N/A | Sao Francisco |  Rio Branco SP |
 Alencar Baú | Out | 2017-11-13 | N/A | Sao Francisco |  Sousa |
 He-Man | Out | 2017-11-13 | N/A | Sao Francisco | Manaus FC |
 Juninho | Out | 2017-09-05 | N/A | Sao Francisco |  Londrina LON |
 Karlenilson Oliveira Silva | Out | 2017-08-15 | Free | Sao Francisco |  River AC |
 Andrelino | In | 2017-07-01 | N/A | Paysandu PAY | Sao Francisco |
 Jerferson Damasceno de Lima | Out | 2017-06-01 | N/A | Sao Francisco |  Sao Raimundo PA |
 Anderson Costa | Out | 2017-06-01 | N/A | Sao Francisco |  Água Santa |
| Elielton | In | 2017-06-01 | N/A |  Mogi Mirim MOG | Sao Francisco |
 Michael Douglas da Silva | Out | 2017-06-01 | N/A | Sao Francisco |  Real Desportivo Ariquemes |
 Edinaldo Malcher de Franca Filho | In | 2017-05-15 | N/A |  Águia de Marabá AGU | Sao Francisco |
| Matheus Silva | In | 2017-05-15 | N/A | Águia de Marabá AGU | Sao Francisco |
 Ramon | In | 2017-05-15 | N/A | Águia de Marabá AGU | Sao Francisco |
| Karlenilson Oliveira Silva | In | 2017-05-14 | Free |  Iporá | Sao Francisco |
 Rodrigo Samuel | In | 2017-05-14 | N/A | Paysandu PAY | Sao Francisco |
 Tiago da Rocha | Out | 2017-04-18 | Free | Sao Francisco |  Vilhena VIL |
 Fábio Francisco Barros da Trindade | Out | 2017-03-20 | N/A | Sao Francisco |  Goianésia GOI |
 Diogo Silva | Out | 2017-03-15 | N/A | Sao Francisco |  Coruripe |
 Perema | Out | 2017-03-01 | N/A | Sao Francisco | Paysandu PAY |
 Lucas dos Santos Lima | In | 2017-02-14 | Loan |  Capital | Sao Francisco |
 Heliton | In | 2017-02-01 | N/A | Águia de Marabá AGU | Sao Francisco |
| Diogo Silva | In | 2017-02-01 | N/A |  Guarani De Juazeiro GUA | Sao Francisco |
| Daelson | In | 2017-02-01 | N/A | Águia de Marabá AGU | Sao Francisco |
 Thiago Floriano | In | 2017-02-01 | N/A | Goianésia GOI | Sao Francisco |
| Fábio Francisco Barros da Trindade | In | 2017-01-20 | N/A |  Afogados | Sao Francisco |
| Andrelino | Out | 2017-01-19 | N/A | Sao Francisco | Paysandu PAY |
 Sidney Nascimento de Brito | Out | 2017-01-19 | N/A | Sao Francisco | Paysandu PAY |
| Tiago da Rocha | In | 2017-01-03 | Free |  Genus GEN | Sao Francisco |
| Alemão | In | 2017-01-03 | N/A |  Palmas | Sao Francisco |
| Rodrigo Samuel | Out | 2017-01-02 | N/A | Sao Francisco | Paysandu PAY |
| He-Man | In | 2017-01-01 | N/A |  Baré | Sao Francisco |
 Angelo Nazareno Ferreira Cardoso | Out | 2017-01-01 | N/A | Sao Francisco | Sao Raimundo PA |
 Labila | In | 2017-01-01 | N/A |  Princesa Solimões PRI | Sao Francisco |
| Thiago Marabá | In | 2017-01-01 | N/A |  Picos | Sao Francisco |
| Charles Anthony Barroso Gomes | In | 2017-01-01 | N/A | Águia de Marabá AGU | Sao Francisco |
 Douglas | Out | 2017-01-01 | N/A | Sao Francisco | Sao Raimundo PA |
| Chaveirinho | Out | 2017-01-01 | N/A | Sao Francisco | Sao Raimundo PA |
