East A
| # | Team | P | W | D | L | GF | GA | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  Vegalta Sendai HOU | 18 | 11 | 5 | 2 | 32 | 15 | 17 | 43 | WWLWD |
| 2 |  Blaublitz Akita | 18 | 11 | 2 | 5 | 23 | 14 | 9 | 35 | LWWWL |
| 3 |  Shonan Bellmare SHO | 18 | 8 | 4 | 6 | 25 | 19 | 6 | 31 | LLLLL |
| 4 |  Yokohama FC YOK | 18 | 8 | 3 | 7 | 34 | 27 | 7 | 29 | WWWWW |
| 5 |  Sagamihara | 18 | 7 | 5 | 6 | 31 | 33 | -2 | 28 | WLLWW |
| 6 |  Thespakusatsu Gunma KUS | 18 | 6 | 4 | 8 | 26 | 36 | -10 | 23 | LLWLL |
| 7 |  Montedio Yamagata MON | 18 | 6 | 2 | 10 | 20 | 25 | -5 | 22 | LLWLL |
| 8 |  Tochigi City | 18 | 5 | 4 | 9 | 20 | 33 | -13 | 21 | WWLWW |
| 9 |  Vanraure Hachinohe | 18 | 4 | 6 | 8 | 15 | 19 | -4 | 20 | LWDLD |
| 10 | Tochigi SC TOC | 18 | 4 | 5 | 9 | 23 | 28 | -5 | 18 | WLDLW |
East B
| # | Team | P | W | D | L | GF | GA | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  Ventforet Kofu KOF | 18 | 10 | 3 | 5 | 21 | 13 | 8 | 35 | WDLLL |
| 2 |  Consadole Sapporo SAP | 18 | 9 | 2 | 7 | 26 | 22 | 4 | 31 | WWLLD |
| 3 |  Iwaki | 18 | 7 | 6 | 5 | 22 | 18 | 4 | 31 | LLWWL |
| 4 |  Omiya Ardija OMI | 18 | 9 | 2 | 7 | 38 | 28 | 10 | 30 | LLWLW |
| 5 |  Fujieda MYFC | 18 | 6 | 9 | 3 | 21 | 17 | 4 | 30 | WWLLW |
| 6 |  FC Gifu GIF | 18 | 8 | 3 | 7 | 24 | 26 | -2 | 28 | WDLWD |
| 7 |  Matsumoto Yamaga MAT | 18 | 6 | 6 | 6 | 31 | 21 | 10 | 26 | LWLWL |
| 8 |  Jubilo Iwata IWA | 18 | 5 | 6 | 7 | 16 | 23 | -7 | 25 | LLWLD |
| 9 |  Fukushima United | 18 | 4 | 4 | 10 | 28 | 41 | -13 | 18 | WLWWD |
| 10 |  Parceiro Nagano NAG | 18 | 3 | 5 | 10 | 15 | 33 | -18 | 16 | LWWWW |
West A
| # | Team | P | W | D | L | GF | GA | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  Kataller Toyama TOY | 18 | 10 | 5 | 3 | 37 | 24 | 13 | 38 | WLLWD |
| 2 |  Albirex Niigata ALB | 18 | 9 | 5 | 4 | 21 | 17 | 4 | 35 | LWWLD |
| 3 |  Tokushima Vortis TOK | 18 | 9 | 3 | 6 | 36 | 22 | 14 | 32 | LWWWW |
| 4 |  Kochi United | 18 | 8 | 4 | 6 | 23 | 21 | 2 | 30 | WLLLL |
| 5 |  Ehime FC EHI | 18 | 8 | 3 | 7 | 25 | 18 | 7 | 28 | LWLLL |
| 6 |  Kanazawa | 18 | 5 | 7 | 6 | 15 | 21 | -6 | 27 | WWWLW |
| 7 |  Nara Club | 18 | 5 | 4 | 9 | 25 | 34 | -9 | 21 | WLWWW |
| 8 |  Osaka | 18 | 3 | 8 | 7 | 15 | 18 | -3 | 20 | LLWLD |
| 9 |  Imabari | 18 | 5 | 4 | 9 | 14 | 18 | -4 | 20 | WLLLD |
| 10 |  Kamatamare Sanuki KAM | 18 | 5 | 3 | 10 | 14 | 32 | -18 | 19 | LWLWL |
West B
| # | Team | P | W | D | L | GF | GA | GD | Pts | Form |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  Tegevajaro Miyazaki | 18 | 15 | 2 | 1 | 35 | 11 | 24 | 47 | WWLLW |
| 2 |  Kagoshima United | 18 | 8 | 5 | 5 | 23 | 15 | 8 | 33 | LWWWW |
| 3 |  Sagan Tosu TOS | 18 | 8 | 6 | 4 | 24 | 14 | 10 | 32 | WLLLW |
| 4 |  Renofa Yamaguchi | 18 | 7 | 5 | 6 | 24 | 22 | 2 | 29 | LWLWL |
| 5 |  Roasso Kumamoto KUM | 18 | 8 | 2 | 8 | 20 | 20 | 0 | 27 | LLWWL |
| 6 |  Gainare Tottori GAI | 18 | 6 | 5 | 7 | 20 | 24 | -4 | 27 | WWWWD |
| 7 |  Oita Trinita OIT | 18 | 6 | 3 | 9 | 18 | 18 | 0 | 22 | LLLLW |
| 8 |  Biwako Shiga | 18 | 6 | 2 | 10 | 15 | 28 | -13 | 21 | LWWWL |
| 9 |  FC Ryukyu | 18 | 2 | 7 | 9 | 13 | 25 | -12 | 17 | WLWWD |
| 10 |  Kitakyushu GIR | 18 | 4 | 3 | 11 | 17 | 32 | -15 | 15 | LLLLL |